Home / microfluidic application note / Setup: droplet and digital microfluidics / NGS, antibody therapy, high-throughput screening using droplet-based microfluidics for single-cell encapsulation
Microfluidics application note

NGS, antibody therapy and high-throughput screening using single cell encapsulation

Scale bar = 400 μm.

Single cell encapsulation using droplet microfluidics

NGS, antibody therapy and high-throughput screening can take great advantage from pressure-driven flow controlled droplet microfluidics and single cell encapsulation.

This note focuses on an application that adequately mines the natural B cell diversity to rapidly isolate antigen-specific antibodies from human patients. The human antibody repertoire is indeed increasingly being recognized as a valuable source of therapeutic grade antibodies. However, methods for mining primary antibody-expressing B cells are limited in their ability to rapidly isolate rare and antigen-specific binders.

This note highlights a microfluidic technique for the encapsulation of two million primary B cells into picoliter-sized droplets, where their cognate V genes are fused in-frame to form a library of scFv cassettes.

Ensure a perfectly controlled droplet size

Screen a large range of variables ideal for data collection

40ms settling: time lowers the loss of expensive samples when priming the system

Create your own control sequence and let it flow

The approach consists in encapsulating single B cells into water-in-oil droplets of 400 pl in volume. A glass fluorophilic microfluidic chips is used with a 2-reagent droplet generation design. The OB1 pressure controller is used to reliably generate evenly sized droplets at high rates. Aqueous liquids of cells and RT-PCR mix are each pumped at 30 mbar while HFE7500 fluorinated oil + 2% w/v 008-fluoro-surfactant is pumped at 67 mbar, with pressures fine-tuned to obtain a 1:1 mix of aqueous fluids. Doing so one million B cells can routinely be encapsulated within 40 min. The architecture of the microfluidic chip is designed to merge two streams of aqueous fluids: one carrying a suspension of B cells and the other containing RT-PCR mix. The resulting emulsion is collected in fractions (about 40 μl emulsion per fraction) in PCR strip tubes and overlaid with 40 μl mineral oil. Excess fluorinated oil is removed to maintain an overall volume of about 100 μl.

For further insight into droplet-based microfluidics, please refer to our droplet microfluidics userguide!

Materials

Elveflow© pressure & flow control instrument (OB1 MK3+).

Sample reservoirs (a Small Reservoir, Medium Reservoir or a Large Microfluidic Reservoir), one for each medium sample.

Glass chip.

NGS, antibody therapy and high-throughput screening: Setup diagram for single cell encapsulation

single cell encapsulation experimental setup

Results

Isolated B cells are purified from convalescent donors and encapsulated into water-in-oil droplets with RT-PCR reagents such that cognate VH and VL domains are amplified and linked. The resulting RT-PCR amplicon forms an expression-ready scFv which can be directly expressed for screening, displayed on page for selections, and deep sequenced for repertoire characterization.

single cell encapsulation

One million B cells could routinely be encapsulated within 40 min. The B cell suspension is titrated to achieve ~1 cell for every 10 droplets which, based on Poisson statistics, will result in single-cell encapsulation with >95% probability.

single cell encapsulationScale bar = 400 μm.

Here, the cell encapsulated droplets were collected in μ-Slide channel slides (Ibidi) and imaged at 200x magnification . Cells were stained with CellTracker Red and Green dyes, mixed, and encapsulated into droplets at a density that favored single-cell encapsulation. Each droplet forms an independent reaction vessel in which that cell’s cognate V genes can be amplified and paired.

Droplet microfluidics for single cell encapsulation allows rapid capturing of the native repertoire from millions of primary human B cells therefore enable a powerful and sensitive screening platform, with significant implications for therapeutic antibody development, immune repertoire characterization and can have wide application in rational vaccine design.

The process outlined here is one of the fastest for antibody discovery from natural repertoires.

A single researcher can rapidly progress from millions of primary B cells to specific monoclonal antibodies within 4 weeks. This process could be a valuable tool for combating emerging infectious diseases, such as the recent Ebola and Zika outbreaks.

This application note is based on the great work of the Antibody Discovery and Protein group, MedImmune

Recombinant human B cell repertoires enable screening for rare, specific, and natively paired antibodies, Saravanan Rajan & co. DOI: 10.1038/s42003-017-0006-2, Nature Communication Biology. Full article here.

How to perform in-chip microfluidic droplet generation?

single cell encapsulation

Drop Seq – A review

single cell encapsulation

Want to run a similar experiment? Feel free to contact us at: contact@elveflow.com
Elveflow team at work

    How can we help you?




    We will answer within 24 hours

    By filling in your info you accept that we use your data.

    Contact
    How can we help you?
    Quoteor technical request Job application Job
    application
    Collaboration or partnerships Collaborations
    or partnerships
    Customer support Customer
    support
    Others questions Other

      Get a quote




      We will answer within 24 hours

      By filling in your info you accept that we use your data.

      Contacting for
      a job application?
      We are happy that you are interested in Elveflow. You can apply to our open jobs or send us your open application on WelcomeToTheJungle. Over here!

        Collaborations




        We will answer within 24 hours

        By filling in your info you accept that we use your data.

          Need customer support?







          I hereby agree that Elveflow uses my personal data

          We will answer within 24 hours

            How can we help you?




            We will answer within 24 hours

            By filling in your info you accept that we use your data.